API

Data

Manage the two level of the file system, that is, the Dataset class to set up the subdirectories and the Field class that loads the image and specify how to operate on it.

Structures

These objects represent the different organelles to be detected.

Detectors

Top level functions to detect specific organelles.

Measure

Measurement modules to analyse and combine the different objects detected.

Serialisers

Top level functions to write results to the file system.

Statistics

Top level functions to derive summary statistics from the results.

Visualisation

Top level functions to draw detected objects on a variety of background images.