Automatic cell scoring for centrioles¶
Cenfind is a pipeline that automates centriole detection and their assignment to nucleus. It combines two trained network that will locate centrioles from centriole marker channel.
This documentation explains what is Cenfind, how to install it and apply it on your dataset. It also describes how to interpret and use the output of the pipeline. Then it showcases typical applications. For more advanced usage, it explains how to train a custom model if the dataset is too divergent. Finally, it explains the architecture of the API.
Check out the Usage section for further information including how to install the pipeline.
Warning
The project and its documentation are not anymore under active development. Please contact the lab https://www.epfl.ch/labs/gonczy-lab/lab-members/ for further information about potential development.